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.\"     Title: gthsplit
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.12
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "GTHSPLIT" "1" "" "\ \&" "\ \&"
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.SH "NAME"
gthsplit \- split GenomeThreader output files
.SH "SYNOPSIS"
.sp
\fBgthsplit\fP  \-alignmentscore | \-coverage [option ...] [file ...]
.SH "DESCRIPTION"
.sp
Split GenomeThreader output files containing intermediate results.
.SH "OPTIONS"
.sp
\fB\-alignmentscore\fP
.RS 4
split according to the overall alignment score (scr)
default: no
.RE
.sp
\fB\-coverage\fP
.RS 4
split according to coverage (cov)
default: no
.RE
.sp
\fB\-range\fP
.RS 4
set the percentage range used to create the sets
default: 5
.RE
.sp
\fB\-minalignmentscore\fP
.RS 4
set the minimum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 0.00
.RE
.sp
\fB\-maxalignmentscore\fP
.RS 4
set the maximum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 1.00
.RE
.sp
\fB\-mincoverage\fP
.RS 4
set the minimum coverage for spliced alignments to be
included into the set of spliced alignments
default: 0.00
.RE
.sp
\fB\-maxcoverage\fP
.RS 4
set the maximum coverage for spliced alignments to be
included into the set of spliced alignments
default: 9999.99
.RE
.sp
\fB\-v\fP
.RS 4
be verbose
default: no
.RE
.sp
\fB\-gzip\fP
.RS 4
write gzip compressed output file(s)
default: no
.RE
.sp
\fB\-bzip2\fP
.RS 4
write bzip2 compressed output file(s)
default: no
.RE
.sp
\fB\-force\fP
.RS 4
force writing to split files
default: no
.RE
.sp
\fB\-help\fP
.RS 4
display help and exit
.RE
.sp
\fB\-version\fP
.RS 4
display version information and exit
.RE