'\" t
.\"     Title: gthbssmbuild
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.12
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "GTHBSSMBUILD" "1" "" "\ \&" "\ \&"
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\fI\\$2\fP <\\$1>\\$3
..
.als MTO URL
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.  mso www.tmac
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.SH "NAME"
gthbssmbuild \- build splice site model
.SH "SYNOPSIS"
.sp
\fBgthbssmbuild\fP [option ...] genomic_file cDNA_file
.SH "DESCRIPTION"
.sp
Build a BSSM file from a directory tree containing the training data.
.SH "OPTIONS"
.sp
\fB\-bssmfile\fP
.RS 4
specify name of BSSM file to store parameters in
default: undefined
.RE
.sp
\fB\-datapath\fP
.RS 4
specify root of species\-specific training data directory tree
default: undefined
.RE
.sp
\fB\-gtdonor\fP
.RS 4
train GT donor model
default: no
.RE
.sp
\fB\-gcdonor\fP
.RS 4
train GC donor model
default: no
.RE
.sp
\fB\-agacceptor\fP
.RS 4
train AG acceptor model
default: no
.RE
.sp
\fB\-gzip\fP
.RS 4
use gzip\(cqed input files
default: no
.RE
.sp
\fB\-help\fP
.RS 4
display help and exit
.RE
.sp
\fB\-version\fP
.RS 4
display version information and exit
.RE