.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH GLISTQUERY "1" "31 May 2018" "GenomeTester" "GenomeTester User Manuals"
.SH NAME
glistquery \- print the frequencies of k-mers in a list file
.SH SYNOPSIS
.B glistquery
\fI\,<INPUTLIST> \/\fR[\fI\,OPTIONS\/\fR]
.SH OPTIONS
.HP
\fB\-v\fR, \fB\-\-version\fR             \- print version information and exit
.HP
\fB\-h\fR, \fB\-\-help\fR                \- print this usage screen and exit
.HP
\fB\-stat\fR                     \- print statistics of the list file and exit
.HP
\fB\-median\fR                   \- print min/max/median/average and exit
.HP
\fB\-q\fR, \fB\-\-query\fR               \- single query word
.HP
\fB\-f\fR, \fB\-\-queryfile\fR           \- list of query words in a file
.HP
\fB\-s\fR, \fB\-\-seqfile\fR             \- FastA/FastQ file
.HP
\fB\-l\fR, \fB\-\-listfile\fR            \- list file made by glistmaker
.HP
\fB\-mm\fR, \fB\-\-mismatch\fR NUMBER    \- specify number of mismatches (default 0, can be used with \fB\-d\fR and \fB\-dd\fR)
.HP
\fB\-p\fR, \fB\-\-perfectmatch\fR NUMBER \- specify number of 3' perfect matches (default 0)
.HP
\fB\-min\fR, \fB\-\-minfreq\fR NUMBER    \- minimum frequency of the printed words (default 0)
.HP
\fB\-max\fR, \fB\-\-maxfreq\fR NUMBER    \- maximum frequency of the printed words (default MAX_UINT)
.HP
\fB\-all\fR                      \- in case of mismatches prints all found words
.HP
\fB\-D\fR                        \- increase debug level
.SH EXAMPLES
 You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md
.SH "SEE ALSO"
 \fBglistmaker\fR(1), \fBglistcompare\fR(1), \fBgmer_caller\fR(1), \fBgmer_counter\fR(1)