.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.43.2.
.TH EMMAX: "1" "June 2013" "emmax: invalid option -- '-'" "User Commands"
.SH NAME
emmax: \- emmax
.SH SYNOPSIS
.B emmax
[\fIoptions\fR]
.SH DESCRIPTION
Required parameters
.HP
\fB\-t\fR [tpedf_prefix] : prefix for tped/tfam files
.TP
\fB\-o\fR [out_prefix]
: output file name prefix
.PP
Likely essential parameters
.HP
\fB\-p\fR [phenof] : 3\-column phenotype file with FAMID, INDID at the first two colmns, in the same order of .tfam file. Not required only with \fB\-K\fR option      \fB\-k\fR [kinf] : n * n matrix containing kinship values in the individual order consistent to [tpedf].tfam file. [tpedf].kinf will be used if not specified
.HP
\fB\-c\fR [covf] : multi\-column covariate file with FAMID, INDID at the first two colmns, in the same order of .tfam fileOptional parameters
.HP
\fB\-i\fR [in_prefix] : input file name prefix including eigenvectors
.TP
\fB\-d\fR [# digits]
: precision of the output values (default : 5)
.HP
\fB\-s\fR [start index of SNP] : start index of SNP (default : 0)
.HP
\fB\-e\fR [end index of SNP] : end index of SNP (default : #snps)
.HP
\fB\-w\fR : flag for writing eigenvalues/eigenvector files
.HP
\fB\-D\fR [delimiters] : delimter string in quotation marks
.HP
\fB\-P\fR [# heaer cols in tped] : # of column headers in tped file
.HP
\fB\-F\fR [# heaer cols in tfam] : # of column headers in tfam file
.PP
Error : Unknown option character ?Usage: emmax [options]
Required parameters
.HP
\fB\-t\fR [tpedf_prefix] : prefix for tped/tfam files
.TP
\fB\-o\fR [out_prefix]
: output file name prefix
.PP
Likely essential parameters
.HP
\fB\-p\fR [phenof] : 3\-column phenotype file with FAMID, INDID at the first two colmns, in the same order of .tfam file. Not required only with \fB\-K\fR option      \fB\-k\fR [kinf] : n * n matrix containing kinship values in the individual order consistent to [tpedf].tfam file. [tpedf].kinf will be used if not specified
.HP
\fB\-c\fR [covf] : multi\-column covariate file with FAMID, INDID at the first two colmns, in the same order of .tfam fileOptional parameters
.HP
\fB\-i\fR [in_prefix] : input file name prefix including eigenvectors
.TP
\fB\-d\fR [# digits]
: precision of the output values (default : 5)
.HP
\fB\-s\fR [start index of SNP] : start index of SNP (default : 0)
.HP
\fB\-e\fR [end index of SNP] : end index of SNP (default : #snps)
.HP
\fB\-w\fR : flag for writing eigenvalues/eigenvector files
.HP
\fB\-D\fR [delimiters] : delimter string in quotation marks
.HP
\fB\-P\fR [# heaer cols in tped] : # of column headers in tped file
.HP
\fB\-F\fR [# heaer cols in tfam] : # of column headers in tfam file