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E-MEM(1) User Commands E-MEM(1)


e-mem - finds position and length of all Maximal Exact Matches (MEMs) for very large genomes


e-mem [options] <reference-file> <query-file>


e-mem finds and outputs the position and length of all maximal exact matches (MEMs) between <query-file> and <reference-file>


match only the characters a, c, g, or t they can be in upper or in lower case
set the minimum length of a match. The default length is 50
compute forward and reverse complement matches
only compute reverse complement matches
report the query-position of a reverse complement match relative to the original query sequence
force 4 column output format regardless of the number of reference sequence input
show the length of the query sequences on the header line
set the split size. The default value is 1
number of threads. The default is 1 thread
show possible options


This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

May 2017 e-mem 0.0+20160706