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KISSREADS2(1) User Commands KISSREADS2(1)


kissreads2 - enhances the kissnp2 results by computing per read set


[Kissreads2 options]

(0 arg) : radseq option, homogeneous read depth along the prediction
(1 arg) : Input predictions
(1 arg) : Input reads
(1 arg) : Output uncoherent file name [default '/dev/null']
(1 arg) : Output coherent file name
(1 arg) : Maximal hamming distance authorized while maping [default '1']
File (.h5) generated by kissnp2, containing the coverage threshold per read set [default '_removemeplease']
(1 arg) : Size of k, used as minial overlap and kmer spanning read coherence [default '31']
(1 arg) : Index Stride [default '2']
(1 arg) : Size of the used seeds (distinct from the size of k) [default '25']
(0 arg) : Output standard Fasta. By default the output is formatted especially for the discoSnp++ pipeline
(0 arg) : Compute genotypes
(1 arg) : number of cores [default '0']
(1 arg) : verbosity level [default '1']
(0 arg) : version
(0 arg) : help


This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

January 2019 kissreads2 2.3.0