.TH DALIGNER 1 "October 2016"
.SH NAME
daligner \- local alignment discovery between long nucleotide sequencing reads
.SH SYNOPSIS
.B daligner
.RI [ options ] " files" ...
.SH DESCRIPTION
These tools permit one to find all significant local alignments between reads encoded in a Dazzler database.
The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer.
That is, the reads are long and noisy, up to 15% on average.
.SH OPTIONS
For a complete description of available commands and their options, see /usr/share/doc/daligner/README.md