.TH GISTANDARD "7" "2.16.7" "gistandard" "giraf recipes" .SH NAME gistandard \- Process a spectro\-photometric standard star observation and compute the instrument response curve. .SH SYNOPSIS esorex .B gistandard [OPTIONS] FILE.sof .SH DESCRIPTION For detailed information please refer to the GIRAFFE pipeline user manual. .PP It is available at http://www.eso.org/pipelines. .SH OPTIONS .TP \fB\-\-remove\-bias\fR \fI\fR Enable bias removal (bool; default: True). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.remove\fR [default = \fITrue\fR]. .TP \fB\-\-bsremove\-method\fR \fI\fR Bias removal method (str; default: \'PROFILE\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.method\fR [default = \fIPROFILE\fR]. .TP \fB\-\-bsremove\-areas\fR \fI\fR Bias areas to use (Xl0:Xr0:Yl0:Yr0, ... ,Xln:Xrn:Yln:Yrn) (str; default: \'5:40:0:4095\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.areas\fR [default = \fI5:40:0:4095\fR]. .TP \fB\-\-bsremove\-sigma\fR \fI\fR Sigma Clipping: sigma threshold factor (float; default: 2.5). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.sigma\fR [default = \fI2.5\fR]. .TP \fB\-\-bsremove\-niter\fR \fI\fR Sigma Clipping: maximum number of iterations (int; default: 5). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.iterations\fR [default = \fI5\fR]. .TP \fB\-\-bsremove\-mfrac\fR \fI\fR Sigma Clipping: minimum fraction of points accepted/total [0.0..1.0] (float; default: 0.8). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.fraction\fR [default = \fI0.8\fR]. .TP \fB\-\-bsremove\-xorder\fR \fI\fR Order of X polynomial fit (CURVE method only) (int; default: 1). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.xorder\fR [default = \fI1\fR]. .TP \fB\-\-bsremove\-yorder\fR \fI\fR Order of Y polynomial fit (CURVE method only) (int; default: 1). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.yorder\fR [default = \fI1\fR]. .TP \fB\-\-bsremove\-xstep\fR \fI\fR Sampling step along X (CURVE method only) (int; default: 1). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.xstep\fR [default = \fI1\fR]. .TP \fB\-\-bsremove\-ystep\fR \fI\fR Sampling step along Y (CURVE method only) (int; default: 1). The full name of this option for the EsoRex configuration file is \fBgiraffe.biasremoval.ystep\fR [default = \fI1\fR]. .TP \fB\-\-extr\-method\fR \fI\fR Extraction method: \'SUM\', \'HORNE\' or \'OPTIMAL\' (str; default: \'SUM\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.method\fR [default = \fISUM\fR]. .TP \fB\-\-extr\-ron\fR \fI\fR New bias sigma (RON) value for bias and dark corrected image (float; default: \-1.0). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.ron\fR [default = \fI\-1.0\fR]. .TP \fB\-\-extr\-psfmodel\fR \fI\fR PSF profile model: `psfexp\', `psfexp2\' (str; default: \'psfexp2\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.psf.model\fR [default = \fIpsfexp2\fR]. .TP \fB\-\-extr\-psfsigma\fR \fI\fR Sigma clippging threshold used for rejecting data points during PSF fitting (Horne\'s sigma). It is used to reject bad pixels and cosmics. (float; default: 7.0). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.psf.sigma\fR [default = \fI7.0\fR]. .TP \fB\-\-extr\-psfniter\fR \fI\fR Maximum number of iterations used for fitting the PSF profile. (int; default: 2). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.psf.iterations\fR [default = \fI2\fR]. .TP \fB\-\-extr\-hewidth\fR \fI\fR Horne extraction method: Number of extra pixels added to the fiber half\-width. (int; default: 2). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.horne.extrawidth\fR [default = \fI2\fR]. .TP \fB\-\-extr\-hmingood\fR \fI\fR Horne extraction method: Minimum number of points used for the profile fit. It sets the lower limit of data points for the pixel rejection. (int; default: 3). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.horne.mingood\fR [default = \fI3\fR]. .TP \fB\-\-extr\-omfrac\fR \fI\fR Optimal extraction method: Minimum fraction of the data points used for fitting the fiber profiles. It sets the lower limit for the pixel rejection. (float; default: 0.9). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.optimal.fraction\fR [default = \fI0.9\fR]. .TP \fB\-\-extr\-owfactor\fR \fI\fR Optimal extraction method: Factor by which the fiber PSF half width is multiplied. Adjacent spectra within this area are assumed to affect the spectrum being extracted. (float; default: 3.0). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.optimal.wfactor\fR [default = \fI3.0\fR]. .TP \fB\-\-extr\-obkgorder\fR \fI\fR Optimal extraction method: Order of the polynomial background model, which is fitted for each wavelength bin along the spatial direction. (int; default: 2). The full name of this option for the EsoRex configuration file is \fBgiraffe.extraction.optimal.bkgorder\fR [default = \fI2\fR]. .TP \fB\-\-flat\-apply\fR \fI\fR Controls the flat field correction. (bool; default: False). The full name of this option for the EsoRex configuration file is \fBgiraffe.flat.apply\fR [default = \fIFalse\fR]. .TP \fB\-\-transmission\-apply\fR \fI\fR Controls the fiber to fiber transmission correction. (bool; default: False). The full name of this option for the EsoRex configuration file is \fBgiraffe.flat.transmission\fR [default = \fIFalse\fR]. .TP \fB\-\-rbin\-method\fR \fI\fR Method to use : `linear\' or `spline\' (str; default: \'linear\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.method\fR [default = \fIlinear\fR]. .TP \fB\-\-rbin\-xresid\fR \fI\fR Use x residuals during rebinning? `true\'/`false\' (bool; default: True). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.xresiduals\fR [default = \fITrue\fR]. .TP \fB\-\-rbin\-lstep\fR \fI\fR Lambda step size, only used if scaling method is \'linear\' (float; default: 0.005). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.lstep\fR [default = \fI0.005\fR]. .TP \fB\-\-rbin\-scmethod\fR \fI\fR Scaling method: `log\' or `linear\' (str; default: \'linear\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.scalemethod\fR [default = \fIlinear\fR]. .TP \fB\-\-rbin\-size\fR \fI\fR Size of output rebinned spectra, 0 means calculate size based on wavelength range and lambda stepsize (int; default: 0). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.size\fR [default = \fI0\fR]. .TP \fB\-\-rbin\-range\fR \fI\fR Rebinning range: `setup\' or `common\' (str; default: \'common\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.rebinning.range\fR [default = \fIcommon\fR]. .TP \fB\-\-recon\-min\fR \fI\fR Minimum wavelength for image reconstruction (float; default: 0.0). The full name of this option for the EsoRex configuration file is \fBgiraffe.fov.range.minimum\fR [default = \fI0.0\fR]. .TP \fB\-\-recon\-max\fR \fI\fR Maximum wavelength for image reconstruction (float; default: 0.0). The full name of this option for the EsoRex configuration file is \fBgiraffe.fov.range.maximum\fR [default = \fI0.0\fR]. .TP \fB\-\-recon\-cube\fR \fI\fR Turns data cube creation on and off (bool; default: True). The full name of this option for the EsoRex configuration file is \fBgiraffe.fov.cube\fR [default = \fITrue\fR]. .TP \fB\-\-recon\-format\fR \fI\fR Selects the file format for cubes (str; default: \'single\'). The full name of this option for the EsoRex configuration file is \fBgiraffe.fov.cube.format\fR [default = \fIsingle\fR]. .TP \fB\-\-flx\-skycorr\fR \fI\fR Correct spectra for the sky emission (bool; default: False). The full name of this option for the EsoRex configuration file is \fBgiraffe.fxcalibration.sky.correct\fR [default = \fIFalse\fR]. .PP Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex \-\-help' command. .SH SEE ALSO The full documentation for the giraf pipeline can be downloaded as a PDF file using the following URL: .IP .B ftp://ftp.eso.org/pub/dfs/pipelines/giraffe/giraf\-pipeline\-manual\-2.11.pdf .PP An overview over the existing ESO pipelines can be found on the web page \fBhttps://www.eso.org/sci/software/pipelines/\fR. .PP Basic documentation about the EsoRex program can be found at the esorex (1) man page. .PP It is possible to call the pipelines from python using the python\-cpl package. See \fBhttps://packages.python.org/python\-cpl/index.html\fR for further information. .PP The other recipes of the giraf pipeline are .IR giframestack (7), .IR gimasterbias (7), .IR gimasterdark (7), .IR gimasterflat (7), .IR giscience (7), .IR giwavecalibration (7) .SH VERSION gistandard 2.16.7 .SH AUTHOR Giraffe Pipeline .SH BUG REPORTS Please report any problems to usd\-help@eso.org. Alternatively, you may send a report to the ESO User Support Department . .SH LICENSE This file is part of the GIRAFFE Instrument Pipeline Copyright (C) 2002\-2014 European Southern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110\-1301 USA