.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH CNVKIT_BREAKS "1" "January 2021" "cnvkit breaks 0.9.8" "User Commands"
.SH NAME
cnvkit_breaks \- List the targeted genes in which a copy number breakpoint occurs.
.SH DESCRIPTION
usage: cnvkit breaks [\-h] [\-m MIN_PROBES] [\-o FILENAME] filename segment
.SS "positional arguments:"
.TP
filename
Processed sample coverage data file (*.cnr), the
output of the 'fix' sub\-command.
.TP
segment
Segmentation calls (.cns), the output of the 'segment'
command).
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-m\fR MIN_PROBES, \fB\-\-min\-probes\fR MIN_PROBES
Minimum number of within\-gene probes on both sides of
a breakpoint to report it. [Default: 1]
.TP
\fB\-o\fR FILENAME, \fB\-\-output\fR FILENAME
Output table file name.