table of contents
| CNVKIT_BINTEST(1) | User Commands | CNVKIT_BINTEST(1) |
NAME¶
cnvkit_bintest - Test for single-bin copy number alterations.
DESCRIPTION¶
usage: cnvkit bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT] cnarray
positional arguments:¶
- cnarray
- Bin-level log2 ratios (.cnr file), as produced by 'fix'.
optional arguments:¶
- -h, --help
- show this help message and exit
- -s FILENAME, --segment FILENAME
- Segmentation calls (.cns), the output of the 'segment' command).
- -a ALPHA, --alpha ALPHA
- Significance threhold. [Default: 0.005]
- -t, --target
- Test target bins only; ignore off-target bins.
- -o OUTPUT, --output OUTPUT
- Output filename.
| January 2021 | cnvkit bintest 0.9.8 |