.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH CNVKIT_BINTEST "1" "January 2021" "cnvkit bintest 0.9.8" "User Commands"
.SH NAME
cnvkit_bintest \- Test for single-bin copy number alterations.
.SH DESCRIPTION
usage: cnvkit bintest [\-h] [\-s FILENAME] [\-a ALPHA] [\-t] [\-o OUTPUT] cnarray
.SS "positional arguments:"
.TP
cnarray
Bin\-level log2 ratios (.cnr file), as produced by
\&'fix'.
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-s\fR FILENAME, \fB\-\-segment\fR FILENAME
Segmentation calls (.cns), the output of the 'segment'
command).
.TP
\fB\-a\fR ALPHA, \fB\-\-alpha\fR ALPHA
Significance threhold. [Default: 0.005]
.TP
\fB\-t\fR, \fB\-\-target\fR
Test target bins only; ignore off\-target bins.
.TP
\fB\-o\fR OUTPUT, \fB\-\-output\fR OUTPUT
Output filename.