Scroll to navigation

GFF2SGA.PL(1) User Commands GFF2SGA.PL(1)

NAME

gff2sga.pl - convert gff to sga

DESCRIPTION

gff2sga.pl [options] <GFF file>
where options are:
Show this stuff
Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
Set Feature name <feature>
Assembly <species> (i.e hg18)
Generate a Centered SGA file
Generate an Unoriented SGA file
Generate an extended SGA file with the 6th field equal to the GFF 'feature' field, and the feature field equal to the GFF 'source'

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

March 2020 gff2sga.pl 1.5.5