.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH ALIGNRECORDS.PY "1" "October 2020" "AlignRecords.py 1.0.1" "User Commands"
.SH NAME
AlignRecords.py \- Repertoire clonal assignment toolkit (Python 3)
.SH DESCRIPTION
usage: AlignRecords.py [\-\-version] [\-h]  ...
.PP
Multiple aligns sequence fields
.SS "help:"
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.SS "subcommands:"
.IP
alignment method
.TP
across
Multiple aligns sequence columns within groups and across rows
using MUSCLE.
.TP
within
Multiple aligns sequence fields within rows using MUSCLE
.TP
block
Multiple aligns sequence groups across both columns and rows
using MUSCLE.
.SS "output files:"
.IP
align\-pass
.IP
database with multiple aligned sequences.
.IP
align\-fail
.IP
database with records failing alignment.
.SS "required fields:"
.IP
sequence_id, v_call, j_call
<field>
.IP
user specified sequence fields to align.
.SS "output fields:"
.IP
<field>_align
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.