.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH CREATE_ZOOMED_MAPS "1" "August 2018" "create_zoomed_maps 20170919" "User Commands"
.SH NAME
create_zoomed_maps \- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
.SH DESCRIPTION
.SS "USAGE:"
.IP
create_zoomed_maps \fB\-p\fR DIR \fB\-c\fR INTEGER \fB\-z\fR INTEGER [Options]
.SS "DESCRIPTION:"
.IP
Creates a zoomed map for completed CCT project.
.SS "REQUIRED ARGUMENTS:"
.HP
\fB\-p\fR, \fB\-\-project\fR DIR
.IP
Path to a completed CCT project.
.HP
\fB\-c\fR, \fB\-\-center\fR INTEGER
.IP
Nucleotide position to center the zoomed map on.
.HP
\fB\-z\fR, \fB\-\-zoom\fR INTEGER
.IP
Zoom multiplier.
.SS "OPTIONAL ARGUMENTS:"
.HP
\fB\-f\fR, \fB\-\-format\fR STRING
.IP
Image format for output map. Options are png, jpg, svg, svgz.
(Default: png)
.HP
\fB\-m\fR, \fB\-\-memory\fR STRING
.IP
Memory value for Java's \fB\-Xmx\fR option (Default: 1500m).
.HP
\fB\-h\fR, \fB\-\-help\fR
.IP
Show this message
.SS "EXAMPLE:"
.IP
create_zoomed_maps \fB\-p\fR my_project \fB\-c\fR 10000 \fB\-z\fR 10 \fB\-format\fR svg
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.