.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.11.
.TH GETVARIANCE "1" "September 2019" "getVariance 0.7.5+dfsg" "User Commands"
.SH NAME
getVariance \- estimates variance of MCMC samples
.SH SYNOPSIS
.B getVariance
\fI\,-o <outFileName>  \/\fR[\fI\,OPTIONS\/\fR] [\fI\,sampleFiles\/\fR]
.SH DESCRIPTION
Estimates variance of MCMC samples from 1 or multiple replicates.
.IP
[sample Files] should contain transposed MCMC samples from replicates.
.SH OPTIONS
.HP
\fB\-\-help\fR
.IP
Show this help information.
.HP
\fB\-l\fR ,   \fB\-\-log\fR
.IP
Use logged values. (default: Off)
.HP
\fB\-\-norm=\fR<normalization>
.IP
Normalization constants for each input file provided as comma separated list of doubles (e.g. 1.0017,1.0,0.9999 ).
.HP
\fB\-o\fR <outFileName> ,   \fB\-\-outFile=\fR<outFileName>
.IP
Name of the output file.
.HP
\fB\-t\fR <type> ,   \fB\-\-type=\fR<type>
.IP
Type of variance, possible values: [sample,sqDif] for sample variance or squared difference. (default: sample)
.HP
\fB\-v\fR ,   \fB\-\-verbose\fR
.IP
Verbose output. (default: Off)