.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.11.
.TH EXTRACTTRANSCRIPTINFO.PY "1" "September 2019" "extractTranscriptInfo.py 0.7.5+dfsg" "User Commands"
.SH NAME
extractTranscriptInfo.py \- extracts information about transcripts from reference Fasta file
.SH SYNOPSIS
.B extractTranscriptInfo.py
[\fI\,options\/\fR] \fI\,<inputFile> <outputFile>\/\fR
.SH DESCRIPTION
.IP
This program extracts information about transcripts from reference Fasta file.
This is partially replaced by using SAM header, which however does not include information about transcript\-gene grouping.
Current version of parseAlignment extracts this information from a reference sequence file (making this script obsolete).
.SH OPTIONS
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-v\fR, \fB\-\-verbose\fR
Verbose output
.TP
\fB\-t\fR TYPE, \fB\-\-type\fR=\fI\,TYPE\/\fR
Type of file to parse: ensembl, cuff, other