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BP_SPLIT_SEQ(1p) User Contributed Perl Documentation BP_SPLIT_SEQ(1p)


bp_split_seq - splits a sequence into equal sized chunks with an optional
overlapping range


bp_split_seq -c 10000 [-o 1000] [-i] -f


The script will split sequences into chunks

Mandatory Options:

  -c  Desired length of the resulting sequences.
  -f  Input file (must be FASTA format).

Special Options:

  -o  Overlapping range between the resulting sequences.
  -i  Create an index file with the resulting sequence files. This is
      useful if you want to pass this list as input arguments into
      another programs (i.e. CLUSTAL, HMMER, etc.).


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Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:


  Ewan Birney E<lt><gt>
  Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
  (some enhancements)
2020-10-28 perl v5.30.3