|BP_MULTI_HMMSEARCH(1p)||User Contributed Perl Documentation||BP_MULTI_HMMSEARCH(1p)|
multi_hmmsearch - perform a hmmsearch into multiple FASTA files
an INDEX file
multi_hmmsearch -p hmm_file [-i] -f index_file
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.
-p HMM profile to use for the search. -f INDEX file that contains a list of FASTA files for the multiple search.
-i Create a new index file with the resulting hmms files. This is useful if you want to pass this list as input arguments into another programs. -h Show this documentation.
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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
Mauricio Herrera Cuadra <mauricio-at-open-bio.org>