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.\" ========================================================================
.\"
.IX Title "Bio::Tradis::DetectTags 3pm"
.TH Bio::Tradis::DetectTags 3pm "2020-01-11" "perl v5.30.0" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
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.SH "NAME"
Bio::Tradis::DetectTags \- Detect tr tags in BAM file
.SH "VERSION"
.IX Header "VERSION"
version 1.4.5
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
Detects presence of tr/tq tags in \s-1BAM\s0 files from Tradis analyses
   use Bio::Tradis::DetectTags;
.PP
.Vb 2
\&   my $pipeline = Bio::Tradis::DetectTags\->new(bamfile => \*(Aqabc\*(Aq);
\&   $pipeline\->tags_present();
.Ve
.SH "NAME"
Bio::Tradis::DetectTags
.SH "PARAMETERS"
.IX Header "PARAMETERS"
.SS "Required"
.IX Subsection "Required"
\&\f(CW\*(C`bamfile\*(C'\fR \- path to/name of file to check
.SH "METHODS"
.IX Header "METHODS"
\&\f(CW\*(C`tags_present\*(C'\fR \- returns true if TraDIS tags are detected in \f(CW\*(C`bamfile\*(C'\fR
.SH "AUTHOR"
.IX Header "AUTHOR"
Carla Cummins <path\-help@sanger.ac.uk>
.SH "COPYRIGHT AND LICENSE"
.IX Header "COPYRIGHT AND LICENSE"
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
.PP
This is free software, licensed under:
.PP
.Vb 1
\&  The GNU General Public License, Version 3, June 2007
.Ve