.\" Automatically generated by Pandoc 2.9.2.1 .\" .TH "tree-to-srq" "1" "Feb 2018" "" "" .hy .SH NAME .PP \f[B]tree-to-srq\f[R] - Generate Scaled Regeneration Quantile (SRQ) plot .SH SYNOPSIS .PP \f[B]tree-to-srq\f[R] \f[I]predicates-file\f[R] \f[I]sampled-trees\f[R] [\f[I]sampled-trees\f[R] ...] .SH DESCRIPTION .PP Generate Scaled Regeneration Quantile (SRQ) plot .SH ALLOWED OPTIONS: .TP \f[B]-h\f[R], \f[B]--help\f[R] produce help message .TP \f[B]--files\f[R] \f[I]arg\f[R] tree samples to examine .TP \f[B]--predicates\f[R] \f[I]arg\f[R] predicates to examine .TP \f[B]-s\f[R] \f[I]arg\f[R] (=10%), \f[B]--skip\f[R] \f[I]arg\f[R] (=10%) Number of trees to skip. .TP \f[B]-x\f[R] \f[I]arg\f[R] (=1), \f[B]--subsample\f[R] \f[I]arg\f[R] (=1) factor by which to sub-sample .TP \f[B]-u\f[R] \f[I]arg\f[R], \f[B]--until\f[R] \f[I]arg\f[R] Read until this number of trees. .TP \f[B]--max-points\f[R] \f[I]arg\f[R] maximum number of points to record .TP \f[B]--mode\f[R] \f[I]arg\f[R] (=SRQ) SRQ, sum, or values .TP \f[B]--invert\f[R] consider the inverse of each event instead .TP \f[B]--no-scale-x\f[R] don\[aq]t scale X .TP \f[B]--no-scale-y\f[R] don\[aq]t scale Y .SH REPORTING BUGS: .PP BAli-Phy online help: . .PP Please send bug reports to . .SH AUTHORS Benjamin Redelings.