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.TH "alignment-info" "1" "Feb 2018" "" ""
.hy
.SH NAME
.PP
\f[B]alignment-info\f[R] - Show useful statistics about the alignment.
.SH SYNOPSIS
.PP
\f[B]alignment-info\f[R] \f[I]alignment-file\f[R] [\f[I]tree-file\f[R]]
[OPTIONS]
.SH DESCRIPTION
.PP
Show useful statistics about the alignment.
.SH ALLOWED OPTIONS:
.TP
\f[B]-h\f[R], \f[B]--help\f[R]
produce help message
.TP
\f[B]--align\f[R] \f[I]arg\f[R]
file with sequences and initial alignment
.TP
\f[B]--tree\f[R] \f[I]arg\f[R]
file with initial tree
.TP
\f[B]--alphabet\f[R] \f[I]arg\f[R]
specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons
.TP
\f[B]-N\f[R], \f[B]--show-names\f[R]
Print the sequence-names and exit
.TP
\f[B]-L\f[R], \f[B]--show-lengths\f[R]
Print the sequence-lengths and exit
.SH REPORTING BUGS:
.PP
BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
.PP
Please send bug reports to <bali-phy-users@googlegroups.com>.
.SH AUTHORS
Benjamin Redelings.