.\" Automatically generated by Pandoc 2.9.2.1
.\"
.TH "alignment-find" "1" "Feb 2018" "" ""
.hy
.SH NAME
.PP
\f[B]alignment-find\f[R] - Find the last (or first) FASTA alignment in a
file.
.SH SYNOPSIS
.PP
\f[B]alignment-find\f[R] [OPTIONS] < in-file
.SH DESCRIPTION
.PP
Find the last (or first) FASTA alignment in a file.
.SH ALLOWED OPTIONS:
.TP
\f[B]-h\f[R], \f[B]--help\f[R]
produce help message
.TP
\f[B]--alphabet\f[R] \f[I]arg\f[R]
Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets,
Codons, or Codons+stop.
.TP
\f[B]--first\f[R]
get the first alignment in the file
.TP
\f[B]--last\f[R]
get the last alignment in the file (default)
.SH REPORTING BUGS:
.PP
BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
.PP
Please send bug reports to <bali-phy-users@googlegroups.com>.
.SH AUTHORS
Benjamin Redelings.