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AEVOL(1) User Manual AEVOL(1)
/#test with man -l <file>


aevol - an in silico experimental evolution platform


aevol_create -h or --help
aevol_create -V or --version
aevol_create [-v] [-f PARAM_FILE] [-o OUTDIR] [-c CFILE] [-p PFILE]


Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.

create an experiment with setup as specified in param_file


print help, then exit
print version number, then exit

-f, --file PARAM_FILE
specify parameter file (default:

-o, --out OUTDIR
specify output directory (default "./")

-c, --chromosome CFILE
load chromosome from given text file instead of generating it

-p, --plasmid PFILE
load plasmid from given text file instead of generating it (params must allow plasmids)


aevol_run, aevol_modify, aevol_propagate

July 2014 aevol 4.4