/#test with man \-l <file>
.TH AEVOL "1" "July 2014" "aevol 4.4" "User Manual"
.SH NAME
aevol \- an in silico experimental evolution platform
.SH SYNOPSIS
.B aevol_create \-h
or
.B \-\-help
.br
.B aevol_create \-V
or
.B \-\-version
.br
.B aevol_create \fR[\fB\-v\fR] \fR[\fB\-f\fI PARAM_FILE\fR] \fR[\fB\-o\fI OUTDIR\fR] \fR[\fB\-c\fI CFILE\fR] \fR[\fB\-p\fI PFILE\fR]
.SH DESCRIPTION
.B Aevol
is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.
.TP
.B aevol_create
create an experiment with setup as specified in
.I param_file
.SH OPTIONS
.TP
.B \-h, \-\-help
print help, then exit
.TP
.B \-V, \-\-version
print version number, then exit
.HP
.B \-f, \-\-file
.I PARAM_FILE
.br
specify parameter file (default: param.in)
.HP
.B \-o, \-\-out
.I OUTDIR
.br
specify output directory (default "./")
.HP
.B \-c, \-\-chromosome
.I CFILE
.br
load chromosome from given text file instead of generating it
.HP
.B \-p, \-\-plasmid
.I PFILE
.br
load plasmid from given text file instead of generating it (params must allow plasmids)
.SH "SEE ALSO"
.B aevol_run, aevol_modify, aevol_propagate