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BP_QUERY_ENTREZ_TAXA(1p) User Contributed Perl Documentation BP_QUERY_ENTREZ_TAXA(1p)


bp_query_entrez_taxa - query Entrez taxonomy database and print out information


bp_query_entrez_taxa "Homo sapiens" "Saccharomyces cerevisiae" Rhizopus Metazoa bp_query_entrez_taxa -gi 28800981 -gi 54301680 -db nucleotide bp_query_entrez_taxa -gi 71836523 -db protein

 Provide the genus and species name in quotes, you can also query for
 a non-species node like Family or Order

Command-line options:
-v or --verbose : print verbose debugging info
-gi : one or many GI numbers to lookup taxon id for
-db : the sequence db (nucleotide or protein) the GI is for

   other arguments are assumed to be species names to lookup in taxonomy db


Jason Stajich jason-at-bioperl-dot-org

2022-02-24 perl v5.34.0