.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH SUPYCOMB "1" "February 2023" "supycomb 0.9.0" "User Commands"
.SH NAME
supycomb \- manual page for supycomb 0.9.0
.SH DESCRIPTION
usage: supycomp [OPTIONS] FILES
.PP
Align several models and calculate NSD
.SS "positional arguments:"
.TP
FILE
pdb files to align
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-v\fR, \fB\-\-verbose\fR
switch to verbose mode
.TP
\fB\-V\fR, \fB\-\-version\fR
show program's version number and exit
.TP
\fB\-m\fR {SLOW,FAST}, \fB\-\-mode\fR {SLOW,FAST}
Either SLOW or FAST, default: SLOW)
.TP
\fB\-e\fR {YES,NO}, \fB\-\-enantiomorphs\fR {YES,NO}
Search enantiomorphs, YES or NO, default: YES)
.TP
\fB\-q\fR {ON,OFF}, \fB\-\-quiet\fR {ON,OFF}
Hide log or not, default: ON
.TP
\fB\-g\fR {YES,NO}, \fB\-\-gui\fR {YES,NO}
Use GUI for figures or not, default: YES
.TP
\fB\-o\fR OUTPUT, \fB\-\-output\fR OUTPUT
output filename, default: aligned.pdb
.PP
supycomb is an open\-source implementation of [J. Appl. Cryst. (2001). 34,
33\-41](doi:10.1107/S0021889800014126). The main difference with supcomb: the
fast mode does not re\-bin beads. It only refines the best matching orientation
which provides a speed\-up of a factor 8.
.SH "SEE ALSO"
The full documentation for
.B supycomb
is maintained as a Texinfo manual.  If the
.B info
and
.B supycomb
programs are properly installed at your site, the command
.IP
.B info supycomb
.PP
should give you access to the complete manual.