'\" t
.\"     Title: gthfilestat
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.16
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "GTHFILESTAT" "1" "" "\ \&" "\ \&"
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.SH "NAME"
gthfilestat \- show statistics about consensus spliced alignments
.SH "SYNOPSIS"
.sp
\fBgthfilestat\fP [option ...] [file ...]
.SH "DESCRIPTION"
.sp
Show statistics about spliced alignments in GenomeThreader output files
containing intermediate results.
.SH "OPTIONS"
.sp
\fB\-minalignmentscore\fP
.RS 4
set the minimum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 0.00
.RE
.sp
\fB\-maxalignmentscore\fP
.RS 4
set the maximum alignment score for spliced alignments to be
included into the set of spliced alignments
default: 1.00
.RE
.sp
\fB\-mincoverage\fP
.RS 4
set the minimum coverage for spliced alignments to be
included into the set of spliced alignments
default: 0.00
.RE
.sp
\fB\-maxcoverage\fP
.RS 4
set the maximum coverage for spliced alignments to be
included into the set of spliced alignments
default: 9999.99
.RE
.sp
\fB\-v\fP
.RS 4
be verbose
default: no
.RE
.sp
\fB\-help\fP
.RS 4
display help and exit
.RE
.sp
\fB\-version\fP
.RS 4
display version information and exit
.RE